Publications in peer-reviewed journals

  1. Edwin Thanarajah S, Iglesias S, Kuzmanovic B, Rigoux L, Stephan KE, Brüning JC,  Tittgemeyer M (2019) Modulation of Midbrain Neurocircuitry by Intranasal Insulin. NeuroImage, in press. doi: 10.1016/j.neuroimage.2019.03.050
  2. Manjaly ZM, Harrison NA, Critchley H, Do CT, Stefanics G, Wenderoth N, Lutterotti A, Müller A, Stephan KE (2019) Pathophysiological and Cognitive Mechanisms of Fatigue in Multiple Sclerosis. Journal of Neurology, Neurosurgery, and Psychiatry, in press. doi: 10.1136/jnnp-2018-320050
  3. Petzschner FH, Weber LA, Wellstein KV, Paolini G, Do CT, Stephan KE (2018) Focus of attention modulates the heartbeat evoked potential. NeuroImage, 186: 595 - 606
  4. Elbau IG, Brücklmeier B, Uhr M, Arloth J, Czamara D,  Spoormaker VI, Czisch M, Stephan KE, Binder EB, Sämann PG (2018) Stress and the brain's hemodynamic response: a new perspective on stress response regulation in humans. Proceedings of the National Academy of Sciences USA 115: 10206-10215
  5. Aponte EA, Tschan D, Stephan KE, Heinzle J (2018) Inhibition failures and late errors in the antisaccade task: Influence of cue delay. Journal of Neurophysiology,
  6. Yao Y., Raman SS, Schiek M, Leff A, Frässle S, Stephan KE (2018). Variational Bayesian Inversion for Hierarchical Unsupervised Generative Embedding (HUGE). NeuroImage, 179: 604-619
  7. Frässle S*, Lomakina EI*, Kasper L, Manjaly ZM, Leff A, Pruessmann KP, Buhmann JM, Stephan KE (2018). A generative model of whole-brain effective connectivity. NeuroImage 179: 505-529.
  8. Stefanics G, Heinzle J, Czigler I, Valentini E, Stephan KE (2018) Timing of repetition suppression of event-related potentials to unattended objects. European Journal of Neuroscience,
  9. Stefanics G, Heinzle J, Horvath A, Stephan KE (2018) Visual mismatch and predictive coding: A computational single-trial ERP study. Journal of Neuroscience 38 (16) 4020-4030;
  10. Symmonds M, Moran CH, Leite MI, Buckley C, Irani SR, Stephan KE, Friston KJ, Moran RJ (2018) Ion channels in EEG: isolating channel dysfunction in NMDA receptor antibody encephalitis. Brain 141: 1691-1702
  11. Khalsa SS, Adolphs R, Cameron OG, Critchley HD, Davenport PW, Feinstein JS, Feusner JD, Garfinkel SN, Lane RD, Mehling WE, Meuret AE, Nemeroff CB, Oppenheimer S, Petzschner FH, Pollatos O, Rhudy JL, Schramm LP, Simmons WK, Stein MB, Stephan KE, Van Den Bergh O, Van Diest I, von Leupoldt A, Paulus MP (2018) Interoception and Mental Health: a Roadmap. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging 3: 501-513.
  12. Frässle S, Yao Y, Schöbi D, Aponte EA, Heinzle J, Stephan KE (2018). Generative models for clinical applications in computational psychiatry. WIREs Cognitive Science 9(3):e1460. doi: 10.1002/wcs.1460
  13. Stephan KE, Petzschner FH, Kasper L, Bayer J, Wellstein KV, Stefanics G, Prüssmann KP, Heinzle J (2017) Laminar fMRI and Computational Theories of Brain Function. NeuroImage
  14. Kasper L, Engel M, Barmet C, Haeberlin M, Wilm BJ, Dietrich BE, Schmid T, Gross S, Brunner DO, Stephan KE, Pruessmann KP (2018) Rapid Anatomical Brain Imaging using Spiral Acquisition and an Expanded Signal Model. NeuroImage 168: 88-100.
  15. Aponte EA, Schöbi D, Stephan KE, Heinzle J (2017) The Stochastic Early Reaction, Inhibition, and late Action (SERIA) model for antisaccades. PLOS Computational Biology 13(8), e1005692,
  16. Petzschner FH, Weber LAE, Gard T, Stephan KE (2017) Computational Psychosomatics and Computational Psychiatry: Toward a joint framework for differential diagnosis. Biological Psychiatry 82:421-430.
  17. Wiehler A, Petzschner F, Stephan KE, Peters J (2017) Episodic tags enhance striatal valuation signals during temporal discounting in pathological gamblers. eNeuro, in press.
  18. Frässle S*, Lomakina EI*, Razi A, Friston KJ, Buhmann JM, Stephan KE (2017). Regression DCM for fMRI. NeuroImage 155:406-421
  19. Bollmann S*, Kasper L*, Vannesjo SJ, Diaconescu AO, Dietrich BE, Gross S, Stephan KE, Pruessmann KP (2017) Analysis and Correction of Field Fluctuations in fMRI using Concurrent Field Monitoring. NeuroImage doi:10.1016/j.neuroimage.2017.01.014
  20. Kasper L, Bollmann S, Diaconescu AO, Hutton C, Heinzle J, Iglesias S, Hauser TU, Sebold M, Manjaly ZM, Pruessmann KP, Stephan KE (2017) The PhysIO Toolbox for Modeling Physiological Noise in fMRI Data. Journal of Neuroscience Methods 276: 56-72.
  21. Stephan KE, Schlagenhauf F, Huys QJM, Raman S, Aponte EA, Brodersen KH, Rigoux L, Moran RJ, Daunizeau J, Dolan RJ, Friston KJ, Heinz A (2017) Computational Neuroimaging Strategies for Single Patient Predictions. NeuroImage 145: 180-199.
  22. Diaconescu AO, Mathys C, Weber LAE, Kasper L, Mauer J, Stephan KE (2017) Hierarchical prediction errors in midbrain and septum during social learning. Soc. Cogn. Affect. Neurosci. 12(4): 618-634.
  23. Stephan KE, Manjaly ZM, Mathys C, Weber LAE, Paliwal S, Gard T, Tittgemeyer M, Fleming S, Haker H, Seth A, Petzschner FH (2016) Allostatic Self-Efficacy: A Metacognitive Theory of Dyshomeostasis-Induced Fatigue and Depression. Frontiers in Human Neuroscience 10: 550 
  24. Marshall L, Mathys C, Ruge D, de Berker AO, Dayan P, Stephan KE, Bestmann S (2016) Pharmacological Fingerprints of Contextual Uncertainty. PLoS Biology e1002575.
  25. Iglesias S, Tomiello S, Schneebeli M, Stephan KE (2016) Models of neuromodulation for computational psychiatry. Wiley Interdisciplinary Reviews: Cognitive Science
  26. Friston K, Brown HR, Siemerkus J, Stephan KE (2016) The dysconnection hypothesis. Schizophrenia Research DOI: 10.1016/j.schres.2016.07.014
  27. Schmack K, Weilnhammer V, Heinzle J, Stephan KE, Sterzer P (2016) Learning What to See in a Changing World. Front. Hum. Neurosci. 10: 263.
  28. Raman S, Deserno L, Schlagenhauf F, Stephan KE (2016) A hierarchical model for integrating unsupervised generative embedding and empirical Bayes. Journal of Neuroscience Methods 269: 6-20.
  29. Stephan KE, Diaconescu AO, Iglesias S (2016) Bayesian inference, dysconnectivity and neuromodulation in schizophrenia. Brain 139: 1874-1876.
  30. Freund P, Friston K, Thompson A, Stephan KE, Ashburner J, Bach DR, Nagy Z, Helms H, Draganski B, Mohammadi S, Schwab ME, Curt A, Weiskopf N (2016) Embodied Neurology: An integrative framework. Brain 139: 1855-1861.
  31. Aponte EA, Raman S, Sengupta B, Penny WD, Stephan KE, Heinzle J (2016) mpdcm: A Toolbox for Massively Parallel Dynamic Causal Modeling. Journal of Neuroscience Methods 257: 7-16.
  32. Frässle S, Paulus FM, Krach S, Schweinberger SR, Stephan KE, Jansen A (2016) Mechanisms of Hemispheric Lateralization: Asymmetric Interhemispheric Recruitment in the Face Perception Network. NeuroImage 124: 977–988.
  33. Heinzle J, Koopmans PJ, den Ouden HEM, Raman SS, Stephan KE (2016) A hemodynamic model for layered BOLD signals. NeuroImage 125: 556-570.
  34. Friston KJ, Litvak V, Oswal A, Razi A, Stephan KE, van Wijk BCM, Ziegler G, Zeidman P (2016) Bayesian model reduction and empirical Bayes for group (DCM) studies. NeuroImage 128: 413-431.
  35. Stephan KE, Bach DR, Fletcher PC, Flint J, Frank MJ, Friston KJ, Heinz A, Huys QJM, Owen M, Binder EB, Dayan P, Johnstone E, Meyer-Lindenberg A, Montague PR, Schnyder U, Wang XJ, Breakspear M (2016) Charting the Landscape of Priority Problems in Psychiatry – Part I: Classification and Diagnosis. The Lancet Psychiatry 3: 77–83.
  36. Stephan KE, Binder EB, Breakspear M, Dayan P, Johnstone E, Meyer-Lindenberg A, Schnyder U, Wang XJ, Bach DR, Fletcher PC, Flint J, Frank MJ, Heinz A, Huys QJM, Montague PR, Owen M, Friston KJ (2016) Charting the Landscape of Priority Problems in Psychiatry – Part II: Pathogenesis and Aetiology. The Lancet Psychiatry 3: 84-90.
  37. Sevgi M, Rigoux L, Kühn A, Mauer J, Schilbach L, Hess M, Gründler T, Ullsperger M, Stephan KE, Brüning J, Tittgemeyer M (2015) An Obesity-Predisposing Variant of the FTO Gene Regulates D2R-Dependent Reward Learning. Journal of Neuroscience 35: 12584-12592.
  38. Stephan KE, Iglesias S, Heinzle J, Diaconescu AO (2015) Translational Perspectives for Computational Neuroimaging. Neuron 87: 716-732.
  39. Vossel S, Mathys C, Stephan KE, Friston KJ (2015) Cortical coupling reflects Bayesian belief updating in the deployment of spatial attention. Journal of Neuroscience 35: 11532-11542.
  40. Dima D, Friston KJ, Stephan KE, Frangou S (2015). Neuroticism and conscientiousness respectively constrain and facilitate short-term plasticity within the working memory neural network. Human Brain Mapping 36: 4158–4163.
  41. Frässle S, Stephan KE, Friston KJ, Steup M, Krach S, Paulus FM, Jansen A (2015) Test-Retest Reliability of Dynamic Causal Modeling for fMRI. NeuroImage 117: 56-66.
  42. Lomakina EL, Paliwal S, Diaconescu AO, Brodersen KH, Aponte EA, Buhmann JM, Stephan KE (2015) Inversion of Hierarchical Bayesian models using Gaussian processes. NeuroImage 118: 133-145.
  43. Petzschner FH, Glasauer S, Stephan KE (2015) A Bayesian Perspective on Magnitude Estimation. Trends in Cognitive Sciences 19: 285-293.
  44. Moran RJ, Jones MW, Blockeel AJ, Adams RA, Stephan KE, Friston KJ (2015) Losing control under ketamine: suppressed cortico-hippocampal drive following acute ketamine in rats. Neuropsychopharmacology 40: 268-277.
  45. Vossel S, Bauer M, Mathys C, Adams RA, Dolan RJ, Stephan KE, Friston KJ (2014) Cholinergic stimulation enhances Bayesian belief updating in the deployment of spatial attention. Journal of Neuroscience 34: 15735-15742.
  46. Maass A, Schütze H, Speck O, Yonelinas A, Tempelmann C, Heinze HJ, Berron D, Cardenas-Blanco A, Brodersen KH, Stephan KE, Düzel E (2014) Laminar activity in the hippocampus and entorhinal cortex related to novelty detection and episodic encoding. Nature Communications 5: 5547.
  47. Mathys C, Lomakina EI, Daunizeau J, Iglesias S, Brodersen KH, Friston KJ, Stephan KE (2014) Uncertainty in perception and the Hierarchical Gaussian Filter. Frontiers in Human Neuroscience 8: 825.
  48. Penny W, Stephan KE (2014) A dynamic Bayesian model of homeostatic control. Lecture Notes in Computer Science 8779: 60-69.
  49. Diaconescu AO, Mathys C, Weber LAE, Daunizeau J, Kasper L, Lomakina EI, Fehr E, Stephan KE (2014) Inferring on the intentions of others by hierarchical Bayesian learning. PLoS Comput Biol 10: e1003810.
  50. Friston KJ, Stephan KE, Montague R, Dolan RJ (2014) Computational psychiatry: the brain as a phantastic organ. The Lancet Psychiatry 1: 148-158.
  51. Paliwal S*, Petzschner F*, Schmitz AK, Tittgemeyer M, Stephan KE (2014) A Model-Based Analysis of Impulsivity Using a Slot-machine Gambling Paradigm. Frontiers in Human Neuroscience 8: 428.
  52. Friston KJ, Kahan J, Razi A, Stephan KE, Sporns O (2014) On nodes and modes in resting state fMRI. NeuroImage 99: 533-547.
  53. Kasper L, Haeberlin M, Dietrich BE, Gross S, Barmet C, Wilm BJ, Vannesjo SJ, Brunner DO, Ruff CC, Stephan KE, Pruessmann KP (2014) Matched-Filter Acquisition for BOLD fMRI. NeuroImage 100: 145-160.
  54. Vossel S, Mathys C, Daunizeau J, Bauer M, Driver J, Friston KJ, Stephan KE (2014) Spatial attention, precision and Bayesian inference: a study of saccadic response speed. Cerebral Cortex 24: 1436-1450.
  55. O’Daly OG, Joyce D, Tracy DK, Stephan KE, Murray RM, Shergill S (2014) Amphetamine sensitisation and memory in healthy human volunteers: A functional magnetic resonance imaging study. Journal of Psychopharmacology 9: e93955
  56. O’Daly OG, Joyce D, Tracy DK, Azim A, Stephan KE, Murray RM, Shergill SS (2014) Amphetamine sensitization alters reward processing in the human striatum and amygdala. PLoS One 9: e93955.
  57. Brodersen KH, Deserno L, Schlagenhauf F, Lin Z, Penny WD, Buhmann JM, Stephan KE (2014) Dissecting psychiatric spectrum disorders by generative embedding. NeuroImage: Clinical 4: 98-111.
  58. Chumbley JR, Burke CJ, Stephan KE, Friston KJ, Tobler PN, Fehr E (2014) Surprise beyond prediction error. Human Brain Mapping 35: 4805-4814.
  59. Rigoux L, Stephan KE, Friston KJ, Daunizeau J (2014) Bayesian model selection for group studies – revisited. NeuroImage 84: 971-985.
  60. Schumann G, Binder EB, Holte, A, de Kloet ER, Oedegaard KJ, Robbins, TW, Walker-Tilley TR, Brown VJ, Buitelaar J, Ciccocioppo R, Cools R, Escera C, Fleischhacker W, Flor H, Frith CD, Heinz A, Johnsen E, Kirschbaum C, Klingberg T, Lesch KP, Lewis S,, Maier W, Mann K, Martinot JL, Meyer-Lindenberg A, Müller CP, Müller WE, Nutt DJ, Persico A, Perugi G, Pessiglione M, Preuss UW, Roiser J, Rossini PM, Rybakowski JK, Sandi C, Stephan KE, Undurraga J, Vieta E, van der Wee N, Wykes T, Maria Haro J, Wittchen HU (2014) Stratified Medicine for Mental Disorders. European Neuropsychopharmacology 24: 5-50.
  61. Stephan KE, Mathys C (2014) Computational Approaches to Psychiatry. Current Opinion in Neurobiology 25: 85-92.
  62. Iglesias S, Mathys C, Brodersen KH, Kasper L, Piccirelli M, den Ouden HEM, Stephan KE (2013) Hierarchical prediction errors in midbrain and basal forebrain during sensory learning. Neuron 80: 519-530.
  63. Schmidt A*, Diaconescu AO*, Kometer M, Friston KJ, Stephan KE, Vollenweider FX (2013) Modeling ketamine effects on synaptic plasticity during the mismatch negativity. Cerebral Cortex 23: 2394-2406.
  64. Lieder F, Stephan KE, Daunizeau J, Garrido MI, Friston KJ (2013) A Neurocomputational model of the mismatch negativity. PLoS Computational Biology 9: e1003288.
  65. Bernal-Casas D, Balaguer-Ballester E, Gerchen MF, Iglesias S, Walter H, Heinz A, Meyer-Lindenberg A, Stephan KE, Kirsch P (2013) Multi-site reproducibility of prefrontal-hippocampal connectivity estimates by stochastic DCM. NeuroImage 82: 555-863.
  66. Adams RA, Stephan KE, Brown HR, Frith CD, Friston KJ (2013) The computational anatomy of psychosis. Frontiers in Psychiatry 4:47.
  67. Jung F, Stephan KE, Backes H, Moran RJ, Gramer M, Kumagai T, Graf R, Endepols H, Tittgemeyer M (2013) Mismatch responses in the awake rat: Evidence from epidural recordings of auditory cortical fields. PLoS One 10:1371.
  68. Woolrich MW, Stephan KE (2013) Biophysical Network Models and the Human Connectome. NeuroImage 80: 330-338.
  69. Moran RJ, Campo P, Symmonds M, Stephan KE, Dolan RJ, Friston KJ (2013) Free energy, precision and learning: the role of cholinergic neuromodulation. Journal of Neuroscience 33(19): 8227-8236.
  70. Brodersen KH, Daunizeau J, Mathys C, Chumbley JR, Buhmann JM, Stephan KE (2013) Variational Bayesian mixed-effects inference for classification studies. NeuroImage 76:345-61.
  71. Stephan KE (2013) The history of CoCoMac. NeuroImage 80: 46-52.
  72. Sulzer J, Sitaram R, Blefari ML, Kollias S, Birbaumer N, Stephan KE, Luft A, Gassert R (2013) Neurofeedback-mediated self-regulation of the dopaminergic midbrain. NeuroImage 83: 817-825.
  73. Daunizeau J, Lemieux L, Vaudano AE, Friston KJ, Stephan KE (2013) An electrophysiological validation of stochastic DCM for fMRI. Frontiers in Computational Neuroscience 6: 103.
  74. Schmidt A, Smieskova R, Aston J, Simon A, Allen P, Fusar-Poli P, McGuire PK, Riecher-Rössler A, Stephan KE, Borgwardt SJ (2013) Brain connectivity abnormalities predating the onset of psychosis: correlation with the effect of medicationJAMA Psychiatry 70: 903-912.
  75. Lieder F, Daunizeau J, Garrido MI, Friston KJ, Stephan KE (2013) Modelling trial-by-trial changes in the mismatch negativity. PLoS Computational Biology 9: e1002911.
  76. Brodersen KH, Mathys C, Chumbley JR, Daunizeau J, Ong CS, Buhmann JM, Stephan KE (2012) Bayesian mixed-effects inference on classification performance in hierarchical datasets. Journal of Machine Learning Research 13: 3133-3176.
  77. Brodersen KH, Wiech K, Lomakina EI, Lin C, Buhmann JM, Bingel U, Ploner M, Stephan KE, Tracey I (2012) Decoding the perception of pain from fMRI using multivariate pattern analysis. NeuroImage 63: 1162-1170.
  78. Schmidt A, Diaconescu AO, Kometer M, Friston KJ, Stephan KE, Vollenweider FX (2012) Modeling Ketamine Effects on Synaptic Plasticity During the Mismatch Negativity. Cerebral Cortex 23: 2394-2406.
  79. Schofield T, Penny W, Stephan KE, Crinion J, Thompson AJ, Price C, Leff A (2012) Changes in auditory feedback connections determine the severity of speech processing deficits after stroke. Journal of Neuroscience 32: 4260-4270.
  80. Stephan KE, Roebroeck A (2012) A short history of causal modeling of fMRI data. NeuroImage 62: 856-863.
  81. Friston KJ, Daunizeau J, Stephan KE (2012) Model selection and gobbledygook: Response to Lohmann et al. NeuroImage 75: 275-278.
  82. Daunizeau J, Stephan KE, Friston KJ (2012) Stochastic Dynamic Causal Modelling of fMRI data: Should we care about neural noise?NeuroImage 62: 464-481.
  83. Schmidt A, Bachmann R, Kometer M, Csomor PA, Stephan KE, Seifritz E, Vollenweider FX (2012) Mismatch negativity encoding of prediction errors predicts S-ketamine-induced cognitive impairments. Neuropsychopharmacology 37: 865-875.
  84. Friston KJ, Shiner T, FitzGerald T, Galea JM, Adams R, Brown H, Dolan RJ, Moran R, Stephan KE, Bestmann S (2012) Dopamine, affordance and active inference. PLoS Computational Biology 8: e1002327.
  85. Friston KJ, Bastos A, Litvak V, Stephan KE, Fries P, Moran RJ (2012) DCM for complex-valued data: Cross-spectra, coherence and phase-delays. NeuroImage 59: 439-455.
  86. Chen CC, Kiebel SJ, Kilner JM, Ward NS, Stephan KE, Wang WJ, Friston KJ (2012) A dynamic causal model for evoked and induced responses. NeuroImage 59: 340-348.
  87. Daunizeau J, Preuschoff K, Friston KJ, Stephan KE (2011) Optimizing experimental design for comparing models of brain function. PLoS Computational Biology 7: e1002280.
  88. Dima D, Stephan KE, Roiser JP, Friston KJ, Frangou S (2011) Effective Connectivity during Processing of Facial Affect: Evidence for Multiple Parallel Pathways. Journal of Neuroscience 31: 14378-14385.
  89. Li B, Daunizeau J, Stephan KE, Penny W, Hu D, Friston K (2011) Generalised filtering and stochastic DCM for fMRI. NeuroImage 58: 442-457.
  90. Daunizeau J, David, O, Stephan KE (2011) Dynamic Causal Modelling: A critical review of the biophysical and statistical foundations. NeuroImage 58: 312-322.
  91. Moran RJ, Jung F, Kumagai T, Endepols H, Graf R, Dolan RJ, Friston KJ, Stephan KE, Tittgemeyer M (2011) Dynamic causal models and physiological inference: a validation study using isoflurane anaesthesia in rodents. PLoS One 6: e22790.
  92. Moran RJ, Symmonds M, Stephan KE, Friston KJ, Dolan RJ (2011) An in vivo assay of synaptic function mediating human cognition. Current Biology< 21: 1320–1325.
  93. Brodersen KH, Schofield TM, Leff AP, Ong CS, Lomakina EI, Buhmann JM, Stephan KE (2011) Generative embedding for model-based classification of fMRI data. PLoS Computational Biology 7: e1002079.
  94. O’Daly OG, Joyce D, Stephan KE, Murray RM, Shergill SS (2011) Functional magnetic resonance imaging investigation of the amphetamine sensitization model of schizophrenia in healthy male volunteers. Archives of General Psychiatry 68: 545-554.
  95. Mathys C, Daunizeau J, Friston KJ, Stephan KE (2011) A Bayesian foundation for individual learning under uncertainty. Frontiers in Human Neuroscience 5: 39.
  96. Friston KJ, Li B, Daunizeau J, Stephan KE (2011) Network discovery with DCM. NeuroImage 56: 1202–1221.
  97. Brodersen KH, Haiss F, Ong CS, Jung F, Tittgemeyer M, Buhmann JM, Weber B, Stephan KE (2011) Model-based feature construction for multivariate decoding. NeuroImage 56: 601-615.
  98. Moran RJ, Stephan KE, Dolan RJ, Friston KJ (2011) Consistent spectral predictors for dynamic causal models of steady state responses. NeuroImage 55: 1694-1708.
  99. Daunizeau J, den Ouden HEM, Pessiglione M, Kiebel SJ, Stephan KE, Friston KJ (2010) Observing the observer (I): Meta-Bayesian models of learning and decision-making. PLoS ONE 5: e15554.
  100. Daunizeau J, den Ouden HEM, Pessiglione M, Kiebel SJ, Friston KJ, Stephan KE (2010) Observing the observer (II): Deciding when to decide. PLoS ONE 5: e15555.
  101. Marreiros AC, Stephan KE, Friston K (2010) Dynamic causal modeling. Scholarpedia 5(7): 9568.
  102. Friston K, Stephan KE, Li B, Daunizeau J (2010) Generalised filtering. Mathematical Problems in Engineering 2010: 621670.
  103. Stephan KE, Friston KJ (2010) Analyzing effective connectivity with fMRI. Wiley Interdisciplinary Reviews: Cognitive Science 1: 446-459.
  104. Penny WD, Stephan KE, Daunizeau J, Joao M, Friston K, Schofield T, Leff AP (2010) Comparing Families of Dynamic Causal Models. PLoS Computational Biology 6: e1000709.
  105. den Ouden HEM, Daunizeau J, Roiser JP, Friston KJ, Stephan KE (2010) Striatal prediction error modulates cortical coupling. Journal of Neuroscience 30: 3210-3219.
  106. Roiser JP, Stephan KE, den Ouden HEM, Friston KJ, Joyce EM (2010) Adaptive and aberrant reward prediction signals in the human brain. NeuroImage 50: 657-664.
  107. Guitart-Masip M, Bunzeck N, Stephan KE, Dolan RJ, Düzel E (2010) Contextual novelty changes reward representations in the striatum. Journal of Neuroscience 30: 1721-1726.
  108. Stephan KE, Penny WD, Moran RJ, den Ouden HEM, Daunizeau J, Friston KJ (2010) Ten simple rules for Dynamic Causal Modelling. NeuroImage 49: 3099-3109.
  109. Kasess CH, Stephan KE, Weissenbacher A, Pezawas L, Moser E, Windischberger C (2010) Multi-Subject Analyses with Dynamic Causal Modeling. NeuroImage 49: 3065-3074.
  110. Allen P, Stephan KE, Mechelli A, Day F, Ward N, Dalton J, Williams S, McGuire P (2010) Cingulate activity and fronto-temporal connectivity in people with prodromal signs of psychosis. NeuroImage 49: 947-955.
  111. Stephan KE, Kasper L, Brodersen KH, Mathys C (2009) Funktionelle und effektive Konnektivität. Klinische Neurophysiologie 40: 222-232.
  112. Garrido MI, Kilner JM, Kiebel SJ, Stephan KE, Baldeweg T, Friston KJ (2009) Repetition suppression and plasticity in the human brain. NeuroImage 48: 269-279.
  113. Stephan KE, Tittgemeyer M, Knösche TR, Moran RJ, Friston KJ (2009) Tractography-based priors for dynamic causal models. NeuroImage 47: 1628-1638.
  114. Schofield TM, Iverson P, Kiebel SJ, Stephan KE, Kilner JM, Friston KJ, Crinion JT, Price CJ, Leff AP (2009) Changing meaning causes coupling changes within higher levels of the cortical hierarchy. Proceedings of the National Academy of Sciences 106: 11765-11770.
  115. Tegnér J, Compte A, Auffray C, An G, Cedersund G, Clermont G, Gutkin B, Oltvai ZN, Stephan KE, Thomas R, Villoslada P (2009) Computational Disease Modeling – Fact or Fiction?BMC Systems Biology 3: 56.
  116. Stephan KE, Penny WD, Daunizeau J, Moran RJ, Friston KJ (2009) Bayesian model selection for group studies. NeuroImage 46: 1004-1017.
  117. Stephan KE, Friston KJ, Frith CD (2009) Dysconnection in schizophrenia: From abnormal synaptic plasticity to failures of self-monitoring. Schizophrenia Bulletin 35: 509-527.
  118. Garrido MI, Kilner JM, Stephan KE, Friston KJ (2009) The mismatch negativity: a review of underlying mechanisms. Clinical Neurophysiology 120: 453-463.
  119. den Ouden HEM, Friston KJ, Daw ND, McIntosh AR, Stephan KE (2009) A dual role for prediction error in associative learning. Cerebral Cortex 19: 1175-1185.
  120. Chen CC, Henson RN, Stephan KE, Kilner JM, Friston KJ (2009) Forward and backward connections in the brain: A DCM study of functional asymmetries. NeuroImage 45: 453-462.
  121. Roiser JP, Stephan KE, den Ouden HEM, Barnes TRE, Friston KJ, Joyce EM (2009) Do patients with schizophrenia exhibit aberrant salience?Psychological Medicine 39: 199-209.
  122. Heim S, Eickhoff SB, Ischebeck AK, Friederici AD, Stephan KE, Amunts K (2009) Effective connectivity of the left BA 44, BA 45, and inferior temporal gyrus during lexical and phonological decisions identified with DCM. Human Brain Mapping 30:392-402.
  123. Moran RJ, Stephan KE, Seidenbecher T, Pape HC, Dolan RJ, Friston KJ (2009) Dynamic causal models of steady-state responses. NeuroImage 44: 796-811.
  124. Leff AP, Schofield AM, Stephan KE, Crinion JT, Friston KJ, Price CJ (2008) The cortical dynamics of intelligible speech. Journal of Neuroscience 28: 13209-13215.
  125. Brodersen KH, Penny WD, Harrison LM, Daunizeau J, Ruff CC, Duzel E, Friston KJ, Stephan KE (2008) Integrated Bayesian models of learning and decision making for saccadic eye movements. Neural Networks 21: 1247-1260.
  126. Allen P, Mechelli A, Stephan KE, Day F, Dalton J, Williams S, McGuire PK (2008) Frontotemporal interactions during overt verbal initiation and suppression. Journal of Cognitive Neuroscience 20: 1656-1669.
  127. Garrido MI, Friston KJ, Kiebel SJ, Stephan KE, Baldeweg T, Kilner JM (2008) The functional anatomy of the MMN: A DCM study of the roving paradigm. NeuroImage 42: 936-944.
  128. Stephan KE, Kasper L, Harrison LM, Daunizeau J, den Ouden HEM, Breakspear M, Friston KJ (2008) Nonlinear dynamic causal models for fMRI. NeuroImage 42: 649-662.
  129. Moran RJ, Stephan KE, Kiebel SJ, Rombach N, O’Connor WT, Murphy KJ, Reilly RB, Friston KJ (2008) Bayesian estimation of synaptic physiology from the spectral responses of neural masses. NeuroImage 42: 272-284.
  130. Stephan KE, Riera JJ, Deco G, Horwitz B (2008) The Brain Connectivity Workshops: Moving the frontiers of computational systems neuroscience. NeuroImage 42: 1-9.
  131. Gobbelé R, Lamberty K, Stephan KE, Stegelmeyer U, Buchner H, Marshall JC, Fink GR, Waberski TD (2008) Temporal activation patterns of lateralized cognitive and task control processes in the human brain. Brain Research 1205: 81-90.
  132. Grol MJ, Majdandzic J, Stephan KE, Verhagen L, Dijkerman C, Bekkering H, Verstraten FAJ, Toni I (2007) Parieto-frontal connectivity during visually-guided grasping. Journal of Neuroscience 27: 11877-11887.
  133. Friston KJ, Stephan KE (2007) Free-energy and the brain. Synthese 159: 417-458.
  134. Stephan KE, Weiskopf N, Drysdale PM, Robinson PA, Friston KJ (2007) Comparing hemodynamic models with DCM. NeuroImage 38: 387-401.
  135. Moran, RJ, Kiebel SJ, Stephan KE, Reilly RB, Daunizeau J, Friston KJ (2007) A neural mass model of spectral responses in electrophysiology. NeuroImage 37: 706-720.
  136. Kumar S, Stephan KE, Warren JD, Friston KJ, Griffiths TD (2007) Hierarchical processing of auditory objects in humans. PLoS Computational Biology 3: e100.
  137. Garrido MI, Kilner JM, Kiebel SJ, Stephan KE, Friston KJ (2007) Dynamic causal modelling of evoked potentials: A reproducibility study. NeuroImage 36: 571-580.
  138. Griffiths TD, Kumar S, Warren JD, Stewart L, Stephan KE, Friston KJ (2007) Approaches to the cortical analysis of auditory objects. Hearing Research 229: 46-53.
  139. Stephan KE, Marshall JC, Penny WD, Friston KJ, Fink GR (2007) Inter-hemispheric integration of visual processing during task-driven lateralization. Journal of Neuroscience 27: 3512-3522.
  140. Manjaly ZM, Bruning N, Neufang S, Stephan KE, Brieber S, Marshall JC, Kamp-Becker I, Remschmidt H, Herpertz-Dahlmann B, Konrad K, Fink GR (2007) Neurophysiological correlates of relatively enhanced local visual search in autistic adolescents. NeuroImage 35: 283-291.
  141. Stephan KE, Harrison LM, Kiebel SJ, David O, Penny WD, Friston KJ (2007) Dynamic causal models of neural system dynamics: current state and future extensions. Journal of Biosciences 32: 129-144.
  142. Harrison LM, Stephan KE, Rees G, Friston KJ (2007) Extra-classical receptive field effects measured in striate cortex with fMRI. NeuroImage 34: 1199-1208.
  143. Stephan KE, Fink GR, Marshall JC (2007) Mechanisms of hemispheric specialization: insights from analyses of connectivity. Neuropsychologia 45: 209-228.
  144. Pleger B, Blankenburg F, Ruff CC, Bestmann S, Wiech K, Stephan KE, Capilla A, Friston KJ, Dolan RJ (2006) Neural coding of tactile decisions in human prefrontal cortex. Journal of Neuroscience 26: 12596-12601.
  145. Wiech K, Kalisch R, Weiskopf N, Pleger B, Stephan KE, Dolan RJ (2006) Anterolateral prefrontal cortex mediates the analgesic effect of expected and perceived control over pain. Journal of Neuroscience 26: 11501-11509.
  146. Rounis E, Stephan KE, Lee L, Siebner HR, Pesenti A, Friston KJ, Rothwell JC, Frackowiak RSJ (2006) Acute changes in fronto-parietal activity following rTMS over the dorsolateral prefrontal cortex in a cued reaction time task. Journal of Neuroscience 26: 9629-9638.
  147. Kalisch R, Korenfeld E, Stephan KE, Weiskopf N, Seymour B, Dolan RJ (2006) Context-dependent human extinction memory is mediated by a ventromedial prefrontal and hippocampal network. Journal of Neuroscience 26: 9503-9511.
  148. Hesse MD, Thiel CM, Stephan KE, Fink GR (2006) The left parietal cortex and motor intention: an event-related fMRI study. Neuroscience 140: 1209-1221.
  149. Stephan KE, Baldeweg T, Friston KJ (2006) Synaptic plasticity and dysconnection in schizophrenia. Biological Psychiatry 59: 929-939.
  150. Stephan KE, Mattout J, David O, Friston KJ (2006) Models of functional neuroimaging data. Current Medical Imaging Reviews 2: 15-34.
  151. Smith APR, Stephan KE, Rugg MD, Dolan RJ (2006) Task and content modulate amygdala-hippocampal connectivity in emotional retrieval. Neuron 49: 631-638.
  152. Pleger B, Blankenburg F, Bestmann S, Ruff CC, Wiech K, Stephan KE, Friston KJ, Dolan RJ (2006) Repetitive transcranial magnetic stimulation-induced changes in sensorimotor coupling parallel improvements of somatosensation in humans. Journal of Neuroscience 26: 1945-1952.
  153. Singer T, Seymour B, O’Doherty J, Stephan KE, Dolan RJ, Frith CD (2006) Empathic neural responses are modulated by the perceived fairness of others. Nature 439: 466-469.
  154. Baldeweg T, Wong D, Stephan KE (2006) Nicotinic modulation of human auditory sensory memory: evidence from mismatch negativity potentials. International Journal of Psychophysiology 59: 49-58.
  155. Stephan KE, Penny WD, Marshall JC, Fink GR, Friston KJ (2005) Investigating the functional role of callosal connections with dynamic causal models. Annals of the New York Academy of Sciences 1064:16-36.
  156. Wiech K, Seymour B, Kalisch R, Stephan KE, Koltzenburg M, Driver J, Dolan RJ (2005) Modulation of pain processing in hyperalgesia by cognitive demand. NeuroImage 27: 59-69.
  157. Eickhoff SB, Stephan KE, Mohlberg H, Grefkes C, Fink GR, Amunts K, Zilles K (2005) A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data. NeuroImage 25: 1325-1335.
  158. Manjaly ZM, Marshall JC, Stephan KE, Gurd JM, Zilles K, Fink GR (2005) Context-dependent interactions of left posterior inferior frontal gyrus in a local visual search task unrelated to language. Cognitive Neuropsychology 22: 292-305.
  159. Schürmann M, Hesse MD, Stephan KE, Saarelaa M, Zilles K, Hari R, Fink GR (2005) Yearning to yawn: the neural basis of contagious yawning. NeuroImage 24: 1260-1264.
  160. Dyhrfjeld-Johnsen J, Maier J, Schubert D, Staiger J, Luhmann HJ, Stephan KE, Kötter R (2005) CoCoDat: A database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry. Journal of Neuroscience Methods 141: 291-308.
  161. Rowe JB, Stephan KE, Friston KJ, Frackowiak RSJ, Passingham RE (2005) The prefrontal cortex shows context-specific changes in effective connectivity to motor or visual cortex during the selection of action or colour. Cerebral Cortex 15: 85-95.
  162. Friston KJ, Stephan KE, Lund TE, Morcom A, Kiebel S (2005) Mixed-effects and fMRI studies. NeuroImage 24: 244-252.
  163. Stephan KE (2004) On the role of general system theory for functional neuroimaging. Journal of Anatomy 205: 443-470.
  164. Penny WD, Stephan KE, Mechelli A, Friston KJ (2004) Modelling functional integration: a comparison of structural equation and dynamic causal models. NeuroImage 23: S264-274.
  165. Giessing C, Thiel CM, Stephan KE, Rösler F, Fink GR (2004) Visuospatial attention: How to measure effects of infrequent, unattended events in a blocked stimulus design. NeuroImage 23: 1370-1381.
  166. Stephan KE, Harrison LM, Penny WD, Friston KJ (2004) Biophysical models of fMRI responses. Current Opinion in Neurobiology 14: 629-635.
  167. Penny WD, Stephan KE, Mechelli A, Friston KJ (2004b) Comparing dynamic causal models. NeuroImage 22: 1157-1172.
  168. Kötter R, Stephan KE (2003) Network participation indices: characterizing component roles for information processing in neural networks. Neural Networks 16: 1261-1275.
  169. Stephan KE, Marshall JC, Friston KJ, Rowe JB, Ritzl A, Zilles K, Fink GR (2003) Lateralized cognitive processes and lateralized task control in the human brain. Science 301: 384-386.
  170. Manjaly ZM, Marshall JC Stephan KE, Gurd JM, Zilles K, Fink GR (2003) In search of the hidden: an fMRI study with implications for the study of patients with autism and with acquired brain injury. NeuroImage 19: 674-683.
  171. Dyhrfjeld-Johnsen J, Stephan KE, Maier J, Luhmann H, Kötter R (2003) Guiding the modeller: organizing and selecting experimental data for single cell models using the CoCoDat database. Neurocomputing 52-54: 239-245.
  172. Toni I, Rowe JB, Stephan KE, Passingham RE (2002) Changes of cortico-striatal effective connectivity during visuo-motor learning. Cerebral Cortex 12: 1040-1047.
  173. Passingham RE Stephan KE, Kötter R (2002) The anatomical basis for functional localization in the cortex.Nature Reviews Neuroscience 3: 606-616.
  174. Kamper L, Bozkurt A, Nielsen P, Dyhrfjeld-Johnsen J, Stephan KE, Kötter R (2002) Modelling the influence of thalamo-cortical projections on prefrontal activity. Neurocomputing 44-46: 869-873.
  175. Bozkurt A, Kamper L, Stephan KE, Kötter R (2002) The structural basis of information transfer from medial temporal lobe to prefrontal cortex in the macaque monkey. Neurocomputing 44-46: 753-758.
  176. Rowe JB, Stephan KE, Friston KJ, Frackowiak RJS, Lees A, Passingham RE (2002) Attention to action in Parkinson’s disease: impaired effective connectivity among frontal cortical regions. Brain 125: 276-289.
  177. Parker GJM*, Stephan KE*, Barker GJ, Rowe JB, MacManus DG, Wheeler-Kingshott CAM, Ciccarelli O, Passingham RE, Spinks R, Lemon RN, Turner R (2002) (* These authors contributed equally to this work.) Initial demonstration of in vivo tracing of axonal connectivity in the macaque brain and comparison with the human brain using Diffusion Tensor Imaging and Fast Marching Tractography. NeuroImage 15: 797-809.
  178. Stephan KE, Kamper L, Bozkurt A, Burns GAPC, Young MP, Kötter R (2001) Advanced database methodology for the Collation of Connectivity data on the Macaque brain (CoCoMac). Philosophical Transactions of the Royal Society London B: Biological Sciences 356: 1159-1186.
  179. Kötter R, Stephan KE, Palomero-Gallagher N, Geyer S, Schleicher A, Zilles K (2001) Multimodal characterisation of cortical areas by multivariate analyses of receptor binding and connectivity data. Anatomy & Embryology 204: 333-350.
  180. Stephan KE, Magnotta VA, White TJ, Arndt S, Flaum M, O’Leary DS, Andreasen NC (2001) Effects of Olanzapine on cerebellar functional connectivity in schizophrenia measured by fMRI during a simple motor task. Psychological Medicine 31: 1065-1078.
  181. Burns GAPC, Stephan KE, Ludäscher B, Gupta A, Kötter R (2001) Towards a federated neuroscientific knowledge management system using brain atlases. Neurocomputing 38-40: 1633-1641.
  182. Kötter R, Hilgetag CC, Stephan KE (2001) Connectional characteristics of areas in Walker’s map of primate prefrontal cortex. Neurocomputing 38-40: 741-746.
  183. Bozkurt A, Kamper L, Stephan KE, Kötter R (2001) Organization of primate amygdalo-prefrontal projections. Neurocomputing 38-40: 1135-1140.
  184. Northoff G, Richter A, Gessner M, Schlagenhauf F, Fell J, Baumgart F, Kaulisch T, Kötter R, Stephan KE, Leschinger A, Bargel B, Witzel T, Hinrichs H, Bogerts B, Scheich H, Heinze HJ (2000) Functional dissociation between medial and lateral orbitofrontal cortical spatiotemporal activation in negative and positive emotions: a combined fMRI/MEG study. Cerebral Cortex 10: 93-107.
  185. Stephan KE, Zilles K, Kötter R (2000a) Coordinate-independent mapping of structural and functional data by Objective Relational Transformation (ORT). Philosophical Transactions of the Royal Society London B: Biological Sciences 355: 37-54.
  186. Stephan KE, Hilgetag CC, Burns GAPC, O’Neill MA, Young MP, Kötter R (2000b) Computational analysis of functional connectivity between areas of primate cerebral cortex. Philosophical Transactions of the Royal Society London B: Biological Sciences 355: 111-126.
  187. Stephan KE, Kötter R (1999) One cortex – many maps: an introduction to coordinate-independent mapping by Objective Relational Transformation (ORT). Neurocomputing 26-27: 1049-1054.
  188. Kötter R, Stephan KE (1997) Useless or helpful? The “limbic system” concept. Reviews in the Neurosciences 8: 139-145.